PLINK  (Ontario Summer School, June 2019) (Old site; new site is at https://scinet.courses)

Title

SCMP913 PLINK (Ontario Summer School, June 2019)

Description

This 3 hours course will focus of data cleaning and statistical analysis of large scale genetic data using PLINK and R softwares. We will use SciNet to run the PLINK analytical workflow to perform markers and individuals quality control, including population stratification and ancestry followed by association analysis between genetic variation and trait of interest. R-software (basic R plotting and ggplot package) will be use to visualize the results. -- Prerequisite: basic Linux command line skills and R

Instructors:

SciNet Team, Vanessa Faria Gonçalves, Clement Zai